Ontology.inrae.fr

Competency Questions of Agronomic Taxon Module (agtx)

IN1 : What is the rank of this taxon ?

Eg., The rank of Triticum taxon is Genus.

IN2 : What is the kingdom of this taxon ?

Eg., The Kingdom of Triticum taxon is Plantae.

IN3 : What are the common names of this taxon in French ?

Eg., The vernacular name of Triticum taxon in French is blé.

IN4 : What are the common names of this taxon in English ?

Eg., The vernacular name of Triticum taxon in english is wheat.

IN5 : What are the different species associated at this taxon ?

Competency Questions of Agronomic Taxon

The associated SPARQL queries are not more uptodate

CQ1: What is the kingdom of this organism

 PREFIX irstea: <http://ontology.irstea.fr/AgronomicTaxon#>
 PREFIX rdf: <http://www.w3.org/1999/02/22-rdf-syntax-ns#>
 PREFIX owl: <http://www.w3.org/2002/07/owl#>
 PREFIX xsd: <http://www.w3.org/2001/XMLSchema#>
 PREFIX rdfs: <http://www.w3.org/2000/01/rdf-schema#>
 SELECT ?organisme ?regne ?nom
 WHERE { ?organisme rdf:type irstea:LivingOrganism.
               ?organisme irstea:isClassifiedBy ?regne.
               ?regne rdf:type irstea:KingdomRank.
               ?regne irstea:hasScientificName ?nom.
             }

CQ2: What is the class of this animal ?

 PREFIX irstea: <http://ontology.irstea.fr/AgronomicTaxon#>
 PREFIX rdf: <http://www.w3.org/1999/02/22-rdf-syntax-ns#>
 PREFIX owl: <http://www.w3.org/2002/07/owl#>
 PREFIX xsd: <http://www.w3.org/2001/XMLSchema#>
 PREFIX rdfs: <http://www.w3.org/2000/01/rdf-schema#>
 SELECT ?animal ?classe ?nom
 WHERE { ?animal rdf:type irstea:LivingOrganism.
                ?animal irstea:isClassifiedBy ?classe.
                ?classe rdf:type irstea:ClassRank.
                ?classe irstea:hasScientificName ?nom.
                }

 PREFIX irstea: <http://ontology.irstea.fr/AgronomicTaxon#>
 PREFIX rdf: <http://www.w3.org/1999/02/22-rdf-syntax-ns#>
 PREFIX owl: <http://www.w3.org/2002/07/owl#>
 PREFIX xsd: <http://www.w3.org/2001/XMLSchema#>
 PREFIX rdfs: <http://www.w3.org/2000/01/rdf-schema#>
 SELECT ?plante ?famille ?nomFamille
 WHERE { ?plante rdf:type irstea:Plant.
            ?plante irstea:isClassifiedBy ?famille.
            ?famille rdf:type irstea:FamilyRank.
            ?famille irstea:hasScientificName ?nomFamille.
            }


 PREFIX irstea: <http://ontology.irstea.fr/AgronomicTaxon#>
 PREFIX rdf: <http://www.w3.org/1999/02/22-rdf-syntax-ns#>
 PREFIX owl: <http://www.w3.org/2002/07/owl#>
 PREFIX xsd: <http://www.w3.org/2001/XMLSchema#>
 PREFIX rdfs: <http://www.w3.org/2000/01/rdf-schema#>
 SELECT ?plante ?nomScientifique
 WHERE { ?plante rdf:type irstea:Plant.
            ?plante irstea:hasScientificName ?nomScientifique.
            }

CQ5: What are the vernacular names of this plant in French ?

 PREFIX irstea: <http://ontology.irstea.fr/AgronomicTaxon#>
 PREFIX rdf: <http://www.w3.org/1999/02/22-rdf-syntax-ns#>
 PREFIX owl: <http://www.w3.org/2002/07/owl#>
 PREFIX xsd: <http://www.w3.org/2001/XMLSchema#>
 PREFIX rdfs: <http://www.w3.org/2000/01/rdf-schema#>
 SELECT ?plante ?nomCommun
 WHERE { ?plante rdf:type irstea:Plant.
            ?plante irstea:hasVernacularName ?nomCommun.
            FILTER (  langMatches( lang(?nomCommun),"FR") )
            }

CQ6: What are the vernacular names of this plant in English ?

 PREFIX irstea: <http://ontology.irstea.fr/AgronomicTaxon#>
 PREFIX rdf: <http://www.w3.org/1999/02/22-rdf-syntax-ns#>
 PREFIX owl: <http://www.w3.org/2002/07/owl#>
 PREFIX xsd: <http://www.w3.org/2001/XMLSchema#>
 PREFIX rdfs: <http://www.w3.org/2000/01/rdf-schema#>
 SELECT ?plante ?nomCommun
 WHERE { ?plante rdf:type irstea:Plant.
            ?plante irstea:hasVernacularName ?nomCommun.
            FILTER (  langMatches( lang(?nomCommun),"EN") )
            }

CQ7: Which taxonomy belongs "tricticum" taxon ?

 PREFIX irstea: <http://ontology.irstea.fr/AgronomicTaxon#>
 PREFIX rdf: <http://www.w3.org/1999/02/22-rdf-syntax-ns#>
 PREFIX owl: <http://www.w3.org/2002/07/owl#>
 PREFIX xsd: <http://www.w3.org/2001/XMLSchema#>
 PREFIX rdfs: <http://www.w3.org/2000/01/rdf-schema#>
 SELECT ?taxon ?nomTaxon ?classification ?nomClassification
 WHERE { ?taxon rdf:type irstea:Taxon.
            ?taxon irstea:inScheme ?classification.
            ?taxon irstea:hasScientificName ?nomTaxon.
            OPTIONAL {?classification rdfs:label ?nomClassification.}
            FILTER ( regex(?nomTaxon, "tricticum"))
        }
 ORDER BY ?classification ?taxon

CQ8: What are the subtaxa of the "plantae" Kingdom ?

 PREFIX irstea: <http://ontology.irstea.fr/AgronomicTaxon#>
 PREFIX rdf: <http://www.w3.org/1999/02/22-rdf-syntax-ns#>
 PREFIX owl: <http://www.w3.org/2002/07/owl#>
 PREFIX xsd: <http://www.w3.org/2001/XMLSchema#>
 PREFIX rdfs: <http://www.w3.org/2000/01/rdf-schema#>
 SELECT ?regne ?nomRegne ?taxon ?nomTaxon
 WHERE { ?regne rdf:type irstea:KingdomRank.
             ?regne irstea:hasScientificName ?nomRegne.
             ?regne irstea:hasLowerRank ?taxon.
             OPTIONAL { ?taxon irstea:hasScientificName ?nomTaxon.}
             FILTER( regex(?nomRegne, "plantae"))
                              }
  ORDER BY ?regne ?taxon

CQ9: What are the wheat cultivar ?

 PREFIX irstea: <http://ontology.irstea.fr/AgronomicTaxon#>
 PREFIX rdf: <http://www.w3.org/1999/02/22-rdf-syntax-ns#>
 PREFIX owl: <http://www.w3.org/2002/07/owl#>
 PREFIX xsd: <http://www.w3.org/2001/XMLSchema#>
 PREFIX rdfs: <http://www.w3.org/2000/01/rdf-schema#>
 SELECT ?variete ?nomVariete ?taxon ?nomTaxon
 WHERE { ?variete rdf:type irstea:VarietyRank.
                ?variete irstea:hasHigherRank ?taxon.
                ?taxon irstea:hasVernacularName ?nomTaxon.
                FILTER( regex(?nomTaxon, "blé"))
                OPTIONAL { ?variete irstea:hasScientificName ?nomVariete.}
                }
 ORDER BY ?variete ?taxon