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BBCH based Plant Phenological Development Ontology (PPDO)
PPDO extend the SKOS model to describe plant phenological development stages. This ontology and related dataset have been created during the https://www.d2kab.org [D2KAB project (2019-2023). The phenological scales of grapevine dataset is the result of a collaboration between the french institute of vine (IFV) and the TSCF lab of INRAE. We would like to thanks Xavier Delpuech and Marc Raynal for this collaboration.
Publications
C. ROUSSEY, X. DELPUECH, F. AMARDEILH, S. BERNARD, C. JONQUET. Semantic Description of Plant Phenological Development Stages, starting with Grapevine In Proceedings of 14th international conference on Metadata and Semantics Research Conference (MTSR), Madrid, Spain, 2-4 December 2020. In: Garoufallou E., Ovalle-Perandones MA. (eds) Metadata and Semantic Research. MTSR 2020. Communications in Computer and Information Science, vol 1355. Springer, Cham. The final authenticated version is available online at https://doi.org/10.1007/978-3-030-71903-6_25 . The author version is available at https://hal.archives-ouvertes.fr/hal-02996846
DOI
data.inrae https://doi.org/10.15454/TIMQHW
Access to SPARQL End Point
The triple store is accessible at http://ontology.irstea.fr/ppdo/sparql
Access to git
All the files are available on the irstea gitlab repository [[https://gitlab.irstea.fr/copain/phenologicalstages]
Query example
List of stages from Baggiolini scale. This scale is related to grapevine and it contains only secondary stages.
SELECT DISTINCT ?stage
WHERE {
?stage a ppdo:SecondaryGrowthStage.
?stage skos:inScheme ?scale.
?scale skos:prefLabel ?label
FILTER REGEX(STR(?label), "baggiolini", "i")
} ORDER BY ?stage
These following examples query two sparql end point: fcu one and ppdo one.
Select the stages that belongs to a phenological scale which label contains the word "bbch". The scale is associated to a crop child of arboriculture
SERVICE <http://ontology.inrae.fr/frenchcropusage/sparql> {
?dummy a skos:Concept .
?dummy skos:prefLabel "arboriculture"@fr .
?dummy skos:narrower+ ?crop .
?crop skos:prefLabel ?lbl.
} SERVICE <http://ontology.inrae.fr/ppdo/sparql> {
?scale a skos:ConceptScheme .
?scale skos:hasTopConcept ?topc .
?topc fcu:relatedCrop ?crop .
?topc skos:narrower+ ?stade .
FILTER (REGEX(STR(?scale), "bbch"))
}
} ORDER BY ?stade
Which phenological scales (concept scheme) are related to a crop child of arboriculture.
SERVICE <http://ontology.inrae.fr/frenchcropusage/sparql> {
?dummy a skos:Concept .
?dummy skos:prefLabel "arboriculture"@fr .
?dummy skos:narrower+ ?crop .
?crop skos:prefLabel ?lbl.
} SERVICE <http://ontology.inrae.fr/ppdo/sparql> {
?scale a skos:ConceptScheme .
?scale skos:hasTopConcept ?topc .
?topc fcu:relatedCrop ?crop .
}
}